GlucoseStorage.swift 22 KB

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  1. import AVFAudio
  2. import Combine
  3. import CoreData
  4. import Foundation
  5. import LoopKit
  6. import SwiftDate
  7. import SwiftUI
  8. import Swinject
  9. protocol GlucoseStorage {
  10. var updatePublisher: AnyPublisher<Void, Never> { get }
  11. func storeGlucose(_ glucose: [BloodGlucose])
  12. func isGlucoseDataFresh(_ glucoseDate: Date?) -> Bool
  13. func syncDate() -> Date
  14. func filterTooFrequentGlucose(_ glucose: [BloodGlucose], at: Date) -> [BloodGlucose]
  15. func lastGlucoseDate() -> Date
  16. func isGlucoseFresh() -> Bool
  17. func getGlucoseNotYetUploadedToNightscout() async -> [BloodGlucose]
  18. func getCGMStateNotYetUploadedToNightscout() async -> [NightscoutTreatment]
  19. func getManualGlucoseNotYetUploadedToNightscout() async -> [NightscoutTreatment]
  20. func getGlucoseNotYetUploadedToHealth() async -> [BloodGlucose]
  21. func getManualGlucoseNotYetUploadedToHealth() async -> [BloodGlucose]
  22. func getGlucoseNotYetUploadedToTidepool() async -> [StoredGlucoseSample]
  23. func getManualGlucoseNotYetUploadedToTidepool() async -> [StoredGlucoseSample]
  24. var alarm: GlucoseAlarm? { get }
  25. func deleteGlucose(_ treatmentObjectID: NSManagedObjectID) async
  26. }
  27. final class BaseGlucoseStorage: GlucoseStorage, Injectable {
  28. private let processQueue = DispatchQueue(label: "BaseGlucoseStorage.processQueue")
  29. @Injected() private var storage: FileStorage!
  30. @Injected() private var broadcaster: Broadcaster!
  31. @Injected() private var settingsManager: SettingsManager!
  32. let coredataContext = CoreDataStack.shared.newTaskContext()
  33. private let updateSubject = PassthroughSubject<Void, Never>()
  34. var updatePublisher: AnyPublisher<Void, Never> {
  35. updateSubject.eraseToAnyPublisher()
  36. }
  37. private enum Config {
  38. static let filterTime: TimeInterval = 3.5 * 60
  39. }
  40. init(resolver: Resolver) {
  41. injectServices(resolver)
  42. }
  43. private var glucoseFormatter: NumberFormatter {
  44. let formatter = NumberFormatter()
  45. formatter.numberStyle = .decimal
  46. formatter.maximumFractionDigits = 0
  47. if settingsManager.settings.units == .mmolL {
  48. formatter.maximumFractionDigits = 1
  49. }
  50. formatter.decimalSeparator = "."
  51. return formatter
  52. }
  53. func storeGlucose(_ glucose: [BloodGlucose]) {
  54. processQueue.sync {
  55. self.coredataContext.perform {
  56. let datesToCheck: Set<Date?> = Set(glucose.compactMap { $0.dateString as Date? })
  57. let fetchRequest: NSFetchRequest<NSFetchRequestResult> = GlucoseStored.fetchRequest()
  58. fetchRequest.predicate = NSCompoundPredicate(andPredicateWithSubpredicates: [
  59. NSPredicate(format: "date IN %@", datesToCheck),
  60. NSPredicate.predicateForOneDayAgo
  61. ])
  62. fetchRequest.propertiesToFetch = ["date"]
  63. fetchRequest.resultType = .dictionaryResultType
  64. var existingDates = Set<Date>()
  65. do {
  66. let results = try self.coredataContext.fetch(fetchRequest) as? [NSDictionary]
  67. existingDates = Set(results?.compactMap({ $0["date"] as? Date }) ?? [])
  68. } catch {
  69. debugPrint("Failed to fetch existing glucose dates: \(error)")
  70. }
  71. var filteredGlucose = glucose.filter { !existingDates.contains($0.dateString) }
  72. // prepare batch insert
  73. let batchInsert = NSBatchInsertRequest(
  74. entity: GlucoseStored.entity(),
  75. managedObjectHandler: { (managedObject: NSManagedObject) -> Bool in
  76. guard let glucoseEntry = managedObject as? GlucoseStored, !filteredGlucose.isEmpty else {
  77. return true // Stop if there are no more items
  78. }
  79. let entry = filteredGlucose.removeFirst()
  80. glucoseEntry.id = UUID()
  81. glucoseEntry.glucose = Int16(entry.glucose ?? 0)
  82. glucoseEntry.date = entry.dateString
  83. glucoseEntry.direction = entry.direction?.rawValue
  84. glucoseEntry.isUploadedToNS = false /// the value is not uploaded to NS (yet)
  85. glucoseEntry.isUploadedToHealth = false /// the value is not uploaded to Health (yet)
  86. glucoseEntry.isUploadedToTidepool = false /// the value is not uploaded to Tidepool (yet)
  87. return false // Continue processing
  88. }
  89. )
  90. // process batch insert
  91. do {
  92. try self.coredataContext.execute(batchInsert)
  93. // Notify subscribers that there is a new glucose value
  94. // We need to do this because the due to the batch insert there is no ManagedObjectContext notification
  95. self.updateSubject.send(())
  96. } catch {
  97. debugPrint(
  98. "Glucose Storage: \(#function) \(DebuggingIdentifiers.failed) failed to execute batch insert: \(error)"
  99. )
  100. }
  101. debug(.deviceManager, "start storage cgmState")
  102. self.storage.transaction { storage in
  103. let file = OpenAPS.Monitor.cgmState
  104. var treatments = storage.retrieve(file, as: [NightscoutTreatment].self) ?? []
  105. var updated = false
  106. for x in glucose {
  107. debug(.deviceManager, "storeGlucose \(x)")
  108. guard let sessionStartDate = x.sessionStartDate else {
  109. continue
  110. }
  111. if let lastTreatment = treatments.last,
  112. let createdAt = lastTreatment.createdAt,
  113. // When a new Dexcom sensor is started, it produces multiple consecutive
  114. // startDates. Disambiguate them by only allowing a session start per minute.
  115. abs(createdAt.timeIntervalSince(sessionStartDate)) < TimeInterval(60)
  116. {
  117. continue
  118. }
  119. var notes = ""
  120. if let t = x.transmitterID {
  121. notes = t
  122. }
  123. if let a = x.activationDate {
  124. notes = "\(notes) activated on \(a)"
  125. }
  126. let treatment = NightscoutTreatment(
  127. duration: nil,
  128. rawDuration: nil,
  129. rawRate: nil,
  130. absolute: nil,
  131. rate: nil,
  132. eventType: .nsSensorChange,
  133. createdAt: sessionStartDate,
  134. enteredBy: NightscoutTreatment.local,
  135. bolus: nil,
  136. insulin: nil,
  137. notes: notes,
  138. carbs: nil,
  139. fat: nil,
  140. protein: nil,
  141. targetTop: nil,
  142. targetBottom: nil
  143. )
  144. debug(.deviceManager, "CGM sensor change \(treatment)")
  145. treatments.append(treatment)
  146. updated = true
  147. }
  148. if updated {
  149. // We have to keep quite a bit of history as sensors start only every 10 days.
  150. storage.save(
  151. treatments.filter
  152. { $0.createdAt != nil && $0.createdAt!.addingTimeInterval(30.days.timeInterval) > Date() },
  153. as: file
  154. )
  155. }
  156. }
  157. }
  158. }
  159. }
  160. func isGlucoseDataFresh(_ glucoseDate: Date?) -> Bool {
  161. guard let glucoseDate = glucoseDate else { return false }
  162. return glucoseDate > Date().addingTimeInterval(-6 * 60)
  163. }
  164. func syncDate() -> Date {
  165. let fr = GlucoseStored.fetchRequest()
  166. fr.predicate = NSPredicate.predicateForOneDayAgo
  167. fr.sortDescriptors = [NSSortDescriptor(keyPath: \GlucoseStored.date, ascending: false)]
  168. fr.fetchLimit = 1
  169. var date: Date?
  170. coredataContext.performAndWait {
  171. do {
  172. let results = try self.coredataContext.fetch(fr)
  173. date = results.first?.date
  174. } catch let error as NSError {
  175. print("Fetch error: \(DebuggingIdentifiers.failed) \(error.localizedDescription), \(error.userInfo)")
  176. }
  177. }
  178. return date ?? .distantPast
  179. }
  180. func lastGlucoseDate() -> Date {
  181. let fr = GlucoseStored.fetchRequest()
  182. fr.predicate = NSPredicate.predicateForOneDayAgo
  183. fr.sortDescriptors = [NSSortDescriptor(keyPath: \GlucoseStored.date, ascending: false)]
  184. fr.fetchLimit = 1
  185. var date: Date?
  186. coredataContext.performAndWait {
  187. do {
  188. let results = try self.coredataContext.fetch(fr)
  189. date = results.first?.date
  190. } catch let error as NSError {
  191. print("Fetch error: \(DebuggingIdentifiers.failed) \(error.localizedDescription), \(error.userInfo)")
  192. }
  193. }
  194. return date ?? .distantPast
  195. }
  196. func isGlucoseFresh() -> Bool {
  197. Date().timeIntervalSince(lastGlucoseDate()) <= Config.filterTime
  198. }
  199. func filterTooFrequentGlucose(_ glucose: [BloodGlucose], at date: Date) -> [BloodGlucose] {
  200. var lastDate = date
  201. var filtered: [BloodGlucose] = []
  202. let sorted = glucose.sorted { $0.date < $1.date }
  203. for entry in sorted {
  204. guard entry.dateString.addingTimeInterval(-Config.filterTime) > lastDate else {
  205. continue
  206. }
  207. filtered.append(entry)
  208. lastDate = entry.dateString
  209. }
  210. return filtered
  211. }
  212. func fetchLatestGlucose() -> GlucoseStored? {
  213. let predicate = NSPredicate.predicateFor20MinAgo
  214. return CoreDataStack.shared.fetchEntities(
  215. ofType: GlucoseStored.self,
  216. onContext: coredataContext,
  217. predicate: predicate,
  218. key: "date",
  219. ascending: false,
  220. fetchLimit: 1
  221. ).first
  222. }
  223. // Fetch glucose that is not uploaded to Nightscout yet
  224. /// - Returns: Array of BloodGlucose to ensure the correct format for the NS Upload
  225. func getGlucoseNotYetUploadedToNightscout() async -> [BloodGlucose] {
  226. let results = await CoreDataStack.shared.fetchEntitiesAsync(
  227. ofType: GlucoseStored.self,
  228. onContext: coredataContext,
  229. predicate: NSPredicate.glucoseNotYetUploadedToNightscout,
  230. key: "date",
  231. ascending: false,
  232. fetchLimit: 288
  233. )
  234. return await coredataContext.perform {
  235. guard let fetchedResults = results as? [GlucoseStored] else { return [] }
  236. return fetchedResults.map { result in
  237. BloodGlucose(
  238. _id: result.id?.uuidString ?? UUID().uuidString,
  239. sgv: Int(result.glucose),
  240. direction: BloodGlucose.Direction(from: result.direction ?? ""),
  241. date: Decimal(result.date?.timeIntervalSince1970 ?? Date().timeIntervalSince1970) * 1000,
  242. dateString: result.date ?? Date(),
  243. unfiltered: Decimal(result.glucose),
  244. filtered: Decimal(result.glucose),
  245. noise: nil,
  246. glucose: Int(result.glucose)
  247. )
  248. }
  249. }
  250. }
  251. // Fetch manual glucose that is not uploaded to Nightscout yet
  252. /// - Returns: Array of NightscoutTreatment to ensure the correct format for the NS Upload
  253. func getManualGlucoseNotYetUploadedToNightscout() async -> [NightscoutTreatment] {
  254. let results = await CoreDataStack.shared.fetchEntitiesAsync(
  255. ofType: GlucoseStored.self,
  256. onContext: coredataContext,
  257. predicate: NSPredicate.manualGlucoseNotYetUploadedToNightscout,
  258. key: "date",
  259. ascending: false,
  260. fetchLimit: 288
  261. )
  262. guard let fetchedResults = results as? [GlucoseStored] else { return [] }
  263. return await coredataContext.perform {
  264. return fetchedResults.map { result in
  265. NightscoutTreatment(
  266. duration: nil,
  267. rawDuration: nil,
  268. rawRate: nil,
  269. absolute: nil,
  270. rate: nil,
  271. eventType: .capillaryGlucose,
  272. createdAt: result.date,
  273. enteredBy: CarbsEntry.manual,
  274. bolus: nil,
  275. insulin: nil,
  276. notes: "Trio User",
  277. carbs: nil,
  278. fat: nil,
  279. protein: nil,
  280. foodType: nil,
  281. targetTop: nil,
  282. targetBottom: nil,
  283. glucoseType: "Manual",
  284. glucose: self.settingsManager.settings
  285. .units == .mgdL ? (self.glucoseFormatter.string(from: Int(result.glucose) as NSNumber) ?? "")
  286. : (self.glucoseFormatter.string(from: Decimal(result.glucose).asMmolL as NSNumber) ?? ""),
  287. units: self.settingsManager.settings.units == .mmolL ? "mmol" : "mg/dl",
  288. id: result.id?.uuidString
  289. )
  290. }
  291. }
  292. }
  293. func getCGMStateNotYetUploadedToNightscout() async -> [NightscoutTreatment] {
  294. async let alreadyUploaded: [NightscoutTreatment] = storage
  295. .retrieveAsync(OpenAPS.Nightscout.uploadedCGMState, as: [NightscoutTreatment].self) ?? []
  296. async let allValues: [NightscoutTreatment] = storage
  297. .retrieveAsync(OpenAPS.Monitor.cgmState, as: [NightscoutTreatment].self) ?? []
  298. let (alreadyUploadedValues, allValuesSet) = await (alreadyUploaded, allValues)
  299. return Array(Set(allValuesSet).subtracting(Set(alreadyUploadedValues)))
  300. }
  301. // Fetch glucose that is not uploaded to Nightscout yet
  302. /// - Returns: Array of BloodGlucose to ensure the correct format for the NS Upload
  303. func getGlucoseNotYetUploadedToHealth() async -> [BloodGlucose] {
  304. let results = await CoreDataStack.shared.fetchEntitiesAsync(
  305. ofType: GlucoseStored.self,
  306. onContext: coredataContext,
  307. predicate: NSPredicate.glucoseNotYetUploadedToHealth,
  308. key: "date",
  309. ascending: false,
  310. fetchLimit: 288
  311. )
  312. guard let fetchedResults = results as? [GlucoseStored] else { return [] }
  313. return await coredataContext.perform {
  314. return fetchedResults.map { result in
  315. BloodGlucose(
  316. _id: result.id?.uuidString ?? UUID().uuidString,
  317. sgv: Int(result.glucose),
  318. direction: BloodGlucose.Direction(from: result.direction ?? ""),
  319. date: Decimal(result.date?.timeIntervalSince1970 ?? Date().timeIntervalSince1970) * 1000,
  320. dateString: result.date ?? Date(),
  321. unfiltered: Decimal(result.glucose),
  322. filtered: Decimal(result.glucose),
  323. noise: nil,
  324. glucose: Int(result.glucose)
  325. )
  326. }
  327. }
  328. }
  329. // Fetch manual glucose that is not uploaded to Nightscout yet
  330. /// - Returns: Array of NightscoutTreatment to ensure the correct format for the NS Upload
  331. func getManualGlucoseNotYetUploadedToHealth() async -> [BloodGlucose] {
  332. let results = await CoreDataStack.shared.fetchEntitiesAsync(
  333. ofType: GlucoseStored.self,
  334. onContext: coredataContext,
  335. predicate: NSPredicate.manualGlucoseNotYetUploadedToHealth,
  336. key: "date",
  337. ascending: false,
  338. fetchLimit: 288
  339. )
  340. guard let fetchedResults = results as? [GlucoseStored] else { return [] }
  341. return await coredataContext.perform {
  342. return fetchedResults.map { result in
  343. BloodGlucose(
  344. _id: result.id?.uuidString ?? UUID().uuidString,
  345. sgv: Int(result.glucose),
  346. direction: BloodGlucose.Direction(from: result.direction ?? ""),
  347. date: Decimal(result.date?.timeIntervalSince1970 ?? Date().timeIntervalSince1970) * 1000,
  348. dateString: result.date ?? Date(),
  349. unfiltered: Decimal(result.glucose),
  350. filtered: Decimal(result.glucose),
  351. noise: nil,
  352. glucose: Int(result.glucose)
  353. )
  354. }
  355. }
  356. }
  357. // Fetch glucose that is not uploaded to Tidepool yet
  358. /// - Returns: Array of StoredGlucoseSample to ensure the correct format for Tidepool upload
  359. func getGlucoseNotYetUploadedToTidepool() async -> [StoredGlucoseSample] {
  360. let results = await CoreDataStack.shared.fetchEntitiesAsync(
  361. ofType: GlucoseStored.self,
  362. onContext: coredataContext,
  363. predicate: NSPredicate.glucoseNotYetUploadedToTidepool,
  364. key: "date",
  365. ascending: false,
  366. fetchLimit: 288
  367. )
  368. guard let fetchedResults = results as? [GlucoseStored] else { return [] }
  369. return await coredataContext.perform {
  370. return fetchedResults.map { result in
  371. BloodGlucose(
  372. _id: result.id?.uuidString ?? UUID().uuidString,
  373. sgv: Int(result.glucose),
  374. direction: BloodGlucose.Direction(from: result.direction ?? ""),
  375. date: Decimal(result.date?.timeIntervalSince1970 ?? Date().timeIntervalSince1970) * 1000,
  376. dateString: result.date ?? Date(),
  377. unfiltered: Decimal(result.glucose),
  378. filtered: Decimal(result.glucose),
  379. noise: nil,
  380. glucose: Int(result.glucose)
  381. )
  382. }
  383. .map { $0.convertStoredGlucoseSample(isManualGlucose: false) }
  384. }
  385. }
  386. // Fetch manual glucose that is not uploaded to Tidepool yet
  387. /// - Returns: Array of StoredGlucoseSample to ensure the correct format for the Tidepool upload
  388. func getManualGlucoseNotYetUploadedToTidepool() async -> [StoredGlucoseSample] {
  389. let results = await CoreDataStack.shared.fetchEntitiesAsync(
  390. ofType: GlucoseStored.self,
  391. onContext: coredataContext,
  392. predicate: NSPredicate.manualGlucoseNotYetUploadedToTidepool,
  393. key: "date",
  394. ascending: false,
  395. fetchLimit: 288
  396. )
  397. guard let fetchedResults = results as? [GlucoseStored] else { return [] }
  398. return await coredataContext.perform {
  399. return fetchedResults.map { result in
  400. BloodGlucose(
  401. _id: result.id?.uuidString ?? UUID().uuidString,
  402. sgv: Int(result.glucose),
  403. direction: BloodGlucose.Direction(from: result.direction ?? ""),
  404. date: Decimal(result.date?.timeIntervalSince1970 ?? Date().timeIntervalSince1970) * 1000,
  405. dateString: result.date ?? Date(),
  406. unfiltered: Decimal(result.glucose),
  407. filtered: Decimal(result.glucose),
  408. noise: nil,
  409. glucose: Int(result.glucose)
  410. )
  411. }.map { $0.convertStoredGlucoseSample(isManualGlucose: true) }
  412. }
  413. }
  414. func deleteGlucose(_ treatmentObjectID: NSManagedObjectID) async {
  415. let taskContext = CoreDataStack.shared.newTaskContext()
  416. taskContext.name = "deleteContext"
  417. taskContext.transactionAuthor = "deleteGlucose"
  418. await taskContext.perform {
  419. do {
  420. let result = try taskContext.existingObject(with: treatmentObjectID) as? GlucoseStored
  421. guard let glucoseToDelete = result else {
  422. debugPrint("Data Table State: \(#function) \(DebuggingIdentifiers.failed) glucose not found in core data")
  423. return
  424. }
  425. taskContext.delete(glucoseToDelete)
  426. guard taskContext.hasChanges else { return }
  427. try taskContext.save()
  428. debugPrint("\(#file) \(#function) \(DebuggingIdentifiers.succeeded) deleted glucose from core data")
  429. } catch {
  430. debugPrint(
  431. "\(#file) \(#function) \(DebuggingIdentifiers.failed) error while deleting glucose from core data: \(error.localizedDescription)"
  432. )
  433. }
  434. }
  435. }
  436. var alarm: GlucoseAlarm? {
  437. /// glucose can not be older than 20 minutes due to the predicate in the fetch request
  438. coredataContext.performAndWait {
  439. guard let glucose = fetchLatestGlucose() else { return nil }
  440. let glucoseValue = glucose.glucose
  441. if Decimal(glucoseValue) <= settingsManager.settings.lowGlucose {
  442. return .low
  443. }
  444. if Decimal(glucoseValue) >= settingsManager.settings.highGlucose {
  445. return .high
  446. }
  447. return nil
  448. }
  449. }
  450. }
  451. protocol GlucoseObserver {
  452. func glucoseDidUpdate(_ glucose: [BloodGlucose])
  453. }
  454. enum GlucoseAlarm {
  455. case high
  456. case low
  457. var displayName: String {
  458. switch self {
  459. case .high:
  460. return NSLocalizedString("LOWALERT!", comment: "LOWALERT!")
  461. case .low:
  462. return NSLocalizedString("HIGHALERT!", comment: "HIGHALERT!")
  463. }
  464. }
  465. }